Productivity and salinity structuring of the microplankton revealed by comparative freshwater metagenomics
Identifieur interne : 000300 ( Main/Exploration ); précédent : 000299; suivant : 000301Productivity and salinity structuring of the microplankton revealed by comparative freshwater metagenomics
Auteurs : Alexander Eiler [Suède] ; Katarzyna Zaremba-Niedzwiedzka [Suède] ; Manuel Martínez-García [États-Unis, Espagne] ; Katherine D. Mcmahon [États-Unis] ; Ramunas Stepanauskas [États-Unis] ; Siv G E. Andersson [Suède] ; Stefan Bertilsson [Suède]Source :
- Environmental Microbiology [ 1462-2912 ] ; 2013.
Abstract
Little is known about the diversity and structuring of freshwater microbial communities beyond the patterns revealed by tracing their distribution in the landscape with common taxonomic markers such as the ribosomal RNA. To address this gap in knowledge, metagenomes from temperate lakes were compared to selected marine metagenomes. Taxonomic analyses of rRNA genes in these freshwater metagenomes confirm the previously reported dominance of a limited subset of uncultured lineages of freshwater bacteria, whereas Archaea were rare. Diversification into marine and freshwater microbial lineages was also reflected in phylogenies of functional genes, and there were also significant differences in functional beta-diversity. The pathways and functions that accounted for these differences are involved in osmoregulation, active transport, carbohydrate and amino acid metabolism. Moreover, predicted genes orthologous to active transporters and recalcitrant organic matter degradation were more common in microbial genomes from oligotrophic versus eutrophic lakes. This comparative metagenomic analysis allowed us to formulate a general hypothesis that oceanic- compared with freshwater-dwelling microorganisms, invest more in metabolism of amino acids and that strategies of carbohydrate metabolism differ significantly between marine and freshwater microbial communities.
Url:
DOI: 10.1111/1462-2920.12301
PubMed: 24118837
PubMed Central: 4253090
Affiliations:
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freshwater metagenomics</title><author><name sortKey="Eiler, Alexander" sort="Eiler, Alexander" uniqKey="Eiler A" first="Alexander" last="Eiler">Alexander Eiler</name><affiliation wicri:level="1"><nlm:aff id="au1"><institution>Department of Ecology and Genetics, Limnology, Uppsala University</institution><addr-line>Uppsala, Sweden</addr-line></nlm:aff><country xml:lang="fr">Suède</country><wicri:regionArea>Uppsala</wicri:regionArea></affiliation></author><author><name sortKey="Zaremba Niedzwiedzka, Katarzyna" sort="Zaremba Niedzwiedzka, Katarzyna" uniqKey="Zaremba Niedzwiedzka K" first="Katarzyna" last="Zaremba-Niedzwiedzka">Katarzyna Zaremba-Niedzwiedzka</name><affiliation wicri:level="1"><nlm:aff id="au2"><institution>Department of Cell and Molecular Biology, Molecular Evolution, Uppsala University</institution><addr-line>Uppsala, Sweden</addr-line></nlm:aff><country xml:lang="fr">Suède</country><wicri:regionArea>Uppsala</wicri:regionArea></affiliation></author><author><name sortKey="Martinez Garcia, Manuel" sort="Martinez Garcia, Manuel" uniqKey="Martinez Garcia M" first="Manuel" last="Martínez-García">Manuel Martínez-García</name><affiliation wicri:level="2"><nlm:aff id="au4"><institution>Single Cell Genomics Center, Bigelow Laboratory for Ocean Sciences</institution><addr-line>East Boothbay, ME, USA</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>East Boothbay, ME</wicri:regionArea><placeName><region type="state">Maine (État)</region></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="au5"><institution>Department of Fisheries, Genetics and Microbiology, University of Alicante</institution><addr-line>Alicante, Spain</addr-line></nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Alicante</wicri:regionArea></affiliation></author><author><name sortKey="Mcmahon, Katherine D" sort="Mcmahon, Katherine D" uniqKey="Mcmahon K" first="Katherine D" last="Mcmahon">Katherine D. Mcmahon</name><affiliation wicri:level="2"><nlm:aff id="au3"><institution>Departments of Civil and Environmental Engineering, and Bacteriology, University of Wisconsin-Madison</institution><addr-line>Madison, WI, USA</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Madison, WI</wicri:regionArea><placeName><region type="state">Wisconsin</region></placeName></affiliation></author><author><name sortKey="Stepanauskas, Ramunas" sort="Stepanauskas, Ramunas" uniqKey="Stepanauskas R" first="Ramunas" last="Stepanauskas">Ramunas Stepanauskas</name><affiliation wicri:level="2"><nlm:aff id="au4"><institution>Single Cell Genomics Center, Bigelow Laboratory for Ocean Sciences</institution><addr-line>East Boothbay, ME, USA</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>East Boothbay, ME</wicri:regionArea><placeName><region type="state">Maine (État)</region></placeName></affiliation></author><author><name sortKey="Andersson, Siv G E" sort="Andersson, Siv G E" uniqKey="Andersson S" first="Siv G E" last="Andersson">Siv G E. Andersson</name><affiliation wicri:level="1"><nlm:aff id="au2"><institution>Department of Cell and Molecular Biology, Molecular Evolution, Uppsala University</institution><addr-line>Uppsala, Sweden</addr-line></nlm:aff><country xml:lang="fr">Suède</country><wicri:regionArea>Uppsala</wicri:regionArea></affiliation></author><author><name sortKey="Bertilsson, Stefan" sort="Bertilsson, Stefan" uniqKey="Bertilsson S" first="Stefan" last="Bertilsson">Stefan Bertilsson</name><affiliation wicri:level="1"><nlm:aff id="au1"><institution>Department of Ecology and Genetics, Limnology, Uppsala University</institution><addr-line>Uppsala, Sweden</addr-line></nlm:aff><country xml:lang="fr">Suède</country><wicri:regionArea>Uppsala</wicri:regionArea></affiliation></author></analytic><series><title level="j">Environmental Microbiology</title><idno type="ISSN">1462-2912</idno><idno type="eISSN">1462-2920</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Little is known about the diversity and structuring of freshwater microbial communities beyond
the patterns revealed by tracing their distribution in the landscape with common taxonomic markers
such as the ribosomal RNA. To address this gap in knowledge, metagenomes from temperate lakes were
compared to selected marine metagenomes. Taxonomic analyses of rRNA genes in these freshwater
metagenomes confirm the previously reported dominance of a limited subset of uncultured lineages of
freshwater bacteria, whereas Archaea were rare. Diversification into marine and freshwater microbial
lineages was also reflected in phylogenies of functional genes, and there were also significant
differences in functional beta-diversity. The pathways and functions that accounted for these
differences are involved in osmoregulation, active transport, carbohydrate and amino acid
metabolism. Moreover, predicted genes orthologous to active transporters and recalcitrant organic
matter degradation were more common in microbial genomes from oligotrophic versus eutrophic lakes.
This comparative metagenomic analysis allowed us to formulate a general hypothesis that oceanic-
compared with freshwater-dwelling microorganisms, invest more in metabolism of amino acids and that
strategies of carbohydrate metabolism differ significantly between marine and freshwater microbial
communities.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Anderson, Mj" uniqKey="Anderson M">MJ Anderson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Battin, Tj" uniqKey="Battin T">TJ Battin</name></author><author><name sortKey="Luyssaert, S" uniqKey="Luyssaert S">S Luyssaert</name></author><author><name sortKey="Kaplan, La" uniqKey="Kaplan L">LA Kaplan</name></author><author><name sortKey="Aufdenkampe, Ak" uniqKey="Aufdenkampe A">AK Aufdenkampe</name></author><author><name sortKey="Richter, A" uniqKey="Richter A">A Richter</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Beifang, N" uniqKey="Beifang N">N Beifang</name></author><author><name sortKey="Limin, F" uniqKey="Limin F">F Limin</name></author><author><name sortKey="Shulei, S" uniqKey="Shulei S">S Shulei</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bertilsson, S" uniqKey="Bertilsson S">S Bertilsson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bragg, Jg" uniqKey="Bragg J">JG Bragg</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Brinkhoff, T" uniqKey="Brinkhoff T">T Brinkhoff</name></author><author><name sortKey="Giebel, Ha" uniqKey="Giebel H">HA Giebel</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Broberg, O" uniqKey="Broberg O">O Broberg</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Carrigg, C" uniqKey="Carrigg C">C Carrigg</name></author><author><name sortKey="Rice, O" uniqKey="Rice O">O Rice</name></author><author><name sortKey="Kavanagh, S" uniqKey="Kavanagh S">S Kavanagh</name></author><author><name sortKey="Collins, G" uniqKey="Collins G">G Collins</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ciccarelli, Fd" uniqKey="Ciccarelli F">FD Ciccarelli</name></author><author><name sortKey="Doerks, T" uniqKey="Doerks T">T Doerks</name></author><author><name sortKey="Von Mering, C" uniqKey="Von Mering C">C von Mering</name></author><author><name sortKey="Creevey, Cj" uniqKey="Creevey C">CJ Creevey</name></author><author><name sortKey="Snel, B" uniqKey="Snel B">B Snel</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Debroas, D" uniqKey="Debroas D">D Debroas</name></author><author><name sortKey="Humbert, Jf" uniqKey="Humbert J">JF Humbert</name></author><author><name sortKey="Enault, F" uniqKey="Enault F">F Enault</name></author><author><name sortKey="Bronner, G" uniqKey="Bronner G">G Bronner</name></author><author><name sortKey="Faubladier, M" uniqKey="Faubladier M">M Faubladier</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Delong, Ef" uniqKey="Delong E">EF DeLong</name></author><author><name sortKey="Preston, Cm" uniqKey="Preston C">CM Preston</name></author><author><name sortKey="Mincer, T" uniqKey="Mincer T">T Mincer</name></author><author><name sortKey="Rich, V" uniqKey="Rich V">V Rich</name></author><author><name sortKey="Hallam, Sj" uniqKey="Hallam S">SJ Hallam</name></author><author><name sortKey="Frigaard, Nu" uniqKey="Frigaard N">NU Frigaard</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Dinsdale, Ea" uniqKey="Dinsdale E">EA Dinsdale</name></author><author><name sortKey="Edwards, Ra" uniqKey="Edwards R">RA Edwards</name></author><author><name sortKey="Hall, D" uniqKey="Hall D">D Hall</name></author><author><name sortKey="Angly, F" uniqKey="Angly F">F Angly</name></author><author><name sortKey="Breitbart, M" uniqKey="Breitbart M">M Breitbart</name></author><author><name sortKey="Brulc, Jm" uniqKey="Brulc J">JM Brulc</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Downing, Ja" uniqKey="Downing J">JA Downing</name></author><author><name sortKey="Prairie, Yt" uniqKey="Prairie Y">YT Prairie</name></author><author><name sortKey="Cole, Jj" uniqKey="Cole J">JJ Cole</name></author><author><name sortKey="Duarte, Cm" uniqKey="Duarte C">CM Duarte</name></author><author><name sortKey="Tranvik, Lj" uniqKey="Tranvik L">LJ Tranvik</name></author><author><name sortKey="Striegl, Rg" uniqKey="Striegl R">RG Striegl</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Duarte, Cm" uniqKey="Duarte C">CM Duarte</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Edgar, Rc" uniqKey="Edgar R">RC Edgar</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Eiler, A" uniqKey="Eiler A">A Eiler</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Eiler, A" uniqKey="Eiler A">A Eiler</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Eiler, A" uniqKey="Eiler A">A Eiler</name></author><author><name sortKey="Heinrich, F" uniqKey="Heinrich F">F Heinrich</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Fierer, N" uniqKey="Fierer N">N Fierer</name></author><author><name sortKey="Breitbart, M" uniqKey="Breitbart M">M Breitbart</name></author><author><name sortKey="Nulton, J" uniqKey="Nulton J">J Nulton</name></author><author><name sortKey="Salamon, P" uniqKey="Salamon P">P Salamon</name></author><author><name sortKey="Lozupone, C" uniqKey="Lozupone C">C Lozupone</name></author><author><name sortKey="Jones, R" uniqKey="Jones R">R Jones</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Fine, Pva" uniqKey="Fine P">PVA Fine</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Franceschini, A" uniqKey="Franceschini A">A Franceschini</name></author><author><name sortKey="Szklarczyk, D" uniqKey="Szklarczyk D">D Szklarczyk</name></author><author><name sortKey="Frankild, S" uniqKey="Frankild S">S Frankild</name></author><author><name sortKey="Kuhn, M" uniqKey="Kuhn M">M Kuhn</name></author><author><name sortKey="Simonovic, M" uniqKey="Simonovic M">M Simonovic</name></author><author><name sortKey="Roth, A" uniqKey="Roth A">A Roth</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Garcia, Sl" uniqKey="Garcia S">SL Garcia</name></author><author><name sortKey="Mcmahon, Kd" uniqKey="Mcmahon K">KD McMahon</name></author><author><name sortKey="Martinez Garcia, M" uniqKey="Martinez Garcia M">M Martinez-Garcia</name></author><author><name sortKey="Sricastava, A" uniqKey="Sricastava A">A Sricastava</name></author><author><name sortKey="Sczyrba, A" uniqKey="Sczyrba A">A Sczyrba</name></author><author><name sortKey="Stepanauskas, R" uniqKey="Stepanauskas R">R Stepanauskas</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gianoulis, Ta" uniqKey="Gianoulis T">TA Gianoulis</name></author><author><name sortKey="Raes, J" uniqKey="Raes J">J Raes</name></author><author><name sortKey="Patel, Pv" uniqKey="Patel P">PV Patel</name></author><author><name sortKey="Bjornson, R" uniqKey="Bjornson R">R Bjornson</name></author><author><name sortKey="Korbel, Jo" uniqKey="Korbel J">JO Korbel</name></author><author><name sortKey="Letunic, I" uniqKey="Letunic I">I Letunic</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gilbert, Ja" uniqKey="Gilbert J">JA Gilbert</name></author><author><name sortKey="Meyer, F" uniqKey="Meyer F">F Meyer</name></author><author><name sortKey="Schriml, L" uniqKey="Schriml L">L Schriml</name></author><author><name sortKey="Joint, Ir" uniqKey="Joint I">IR Joint</name></author><author><name sortKey="Muhling, M" uniqKey="Muhling M">M Muhling</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Giovannoni, Sj" uniqKey="Giovannoni S">SJ Giovannoni</name></author><author><name sortKey="Tripp, Hj" uniqKey="Tripp H">HJ Tripp</name></author><author><name sortKey="Givan, S" uniqKey="Givan S">S Givan</name></author><author><name sortKey="Podar, M" uniqKey="Podar M">M Podar</name></author><author><name sortKey="Vergin, Kl" uniqKey="Vergin K">KL Vergin</name></author><author><name sortKey="Baptista, D" uniqKey="Baptista D">D Baptista</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Glockner, Fo" uniqKey="Glockner F">FO Glöckner</name></author><author><name sortKey="Fuchs, B" uniqKey="Fuchs B">B Fuchs</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Goslee, Sc" uniqKey="Goslee S">SC Goslee</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Grote, J" uniqKey="Grote J">J Grote</name></author><author><name sortKey="Thrash, Jc" uniqKey="Thrash J">JC Thrash</name></author><author><name sortKey="Huggett, Mj" uniqKey="Huggett M">MJ Huggett</name></author><author><name sortKey="Landry, Zc" uniqKey="Landry Z">ZC Landry</name></author><author><name sortKey="Carini, P" uniqKey="Carini P">P Carini</name></author><author><name sortKey="Giovannoni, Sj" uniqKey="Giovannoni S">SJ Giovannoni</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hahn, Mw" uniqKey="Hahn M">MW Hahn</name></author><author><name sortKey="Scheuerl, T" uniqKey="Scheuerl T">T Scheuerl</name></author><author><name sortKey="Jezberova, J" uniqKey="Jezberova J">J Jezberová</name></author><author><name sortKey="Koll, U" uniqKey="Koll U">U Koll</name></author><author><name sortKey="Jezbera, J" uniqKey="Jezbera J">J Jezbera</name></author><author><name sortKey="Simek, K" uniqKey="Simek K">K Šimek</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ilikchyan, In" uniqKey="Ilikchyan I">IN Ilikchyan</name></author><author><name sortKey="Mckay, Rml" uniqKey="Mckay R">RML McKay</name></author><author><name sortKey="Zehr, Jp" uniqKey="Zehr J">JP Zehr</name></author><author><name sortKey="Dyhrman, St" uniqKey="Dyhrman S">ST Dyhrman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="King, Gm" uniqKey="King G">GM King</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kolmonen, E" uniqKey="Kolmonen E">E Kolmonen</name></author><author><name sortKey="Haukka, K" uniqKey="Haukka K">K Haukka</name></author><author><name sortKey="Rantala Ylinen, A" uniqKey="Rantala Ylinen A">A Rantala-Ylinen</name></author><author><name sortKey="Rajaniemi Wacklin, P" uniqKey="Rajaniemi Wacklin P">P Rajaniemi-Wacklin</name></author><author><name sortKey="Lepisto, L" uniqKey="Lepisto L">L Lepistö</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kunin, V" uniqKey="Kunin V">V Kunin</name></author><author><name sortKey="Raes, J" uniqKey="Raes J">J Raes</name></author><author><name sortKey="Harris, Jk" uniqKey="Harris J">JK Harris</name></author><author><name sortKey="Spear, Jr" uniqKey="Spear J">JR Spear</name></author><author><name sortKey="Walker, Jj" uniqKey="Walker J">JJ Walker</name></author><author><name sortKey="Ivanova, N" uniqKey="Ivanova N">N Ivanova</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Letunic, I" uniqKey="Letunic I">I Letunic</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lindstrom, Es" uniqKey="Lindstrom E">ES Lindström</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lindstrom, Es" uniqKey="Lindstrom E">ES Lindström</name></author><author><name sortKey="Kamst Van Agterveld, Mp" uniqKey="Kamst Van Agterveld M">MP Kamst-Van Agterveld</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Logares, R" uniqKey="Logares R">R Logares</name></author><author><name sortKey="Br Te, J" uniqKey="Br Te J">J Bråte</name></author><author><name sortKey="Bertilsson, S" uniqKey="Bertilsson S">S Bertilsson</name></author><author><name sortKey="Clasen, Jl" uniqKey="Clasen J">JL Clasen</name></author><author><name sortKey="Shalchian Tabrizi, K" uniqKey="Shalchian Tabrizi K">K Shalchian-Tabrizi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lozupone, Ca" uniqKey="Lozupone C">CA Lozupone</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ludwig, W" uniqKey="Ludwig W">W Ludwig</name></author><author><name sortKey="Strunk, O" uniqKey="Strunk O">O Strunk</name></author><author><name sortKey="Westram, R" uniqKey="Westram R">R Westram</name></author><author><name sortKey="Richter, L" uniqKey="Richter L">L Richter</name></author><author><name sortKey="Meier, H" uniqKey="Meier H">H Meier</name></author><author><name sortKey="Yadhukumar" uniqKey="Yadhukumar">Yadhukumar</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Martinez Garcia, M" uniqKey="Martinez Garcia M">M Martinez-Garcia</name></author><author><name sortKey="Swan, Bk" uniqKey="Swan B">BK Swan</name></author><author><name sortKey="Poulton, Nj" uniqKey="Poulton N">NJ Poulton</name></author><author><name sortKey="Gomez, Ml" uniqKey="Gomez M">ML Gomez</name></author><author><name sortKey="Masland, D" uniqKey="Masland D">D Masland</name></author><author><name sortKey="Sieracki, Me" uniqKey="Sieracki M">ME Sieracki</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Martiny, Jbh" uniqKey="Martiny J">JBH Martiny</name></author><author><name sortKey="Bohannan, Bjm" uniqKey="Bohannan B">BJM Bohannan</name></author><author><name sortKey="Brown, Jh" uniqKey="Brown J">JH Brown</name></author><author><name sortKey="Colwell, Rk" uniqKey="Colwell R">RK Colwell</name></author><author><name sortKey="Fuhrman, Ja" uniqKey="Fuhrman J">JA Fuhrman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Newton, Rj" uniqKey="Newton R">RJ Newton</name></author><author><name sortKey="Jones, Se" uniqKey="Jones S">SE Jones</name></author><author><name sortKey="Eiler, A" uniqKey="Eiler A">A Eiler</name></author><author><name sortKey="Mcmahon, Kd" uniqKey="Mcmahon K">KD McMahon</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Oh, S" uniqKey="Oh S">S Oh</name></author><author><name sortKey="Caro Quintero, A" uniqKey="Caro Quintero A">A Caro-Quintero</name></author><author><name sortKey="Tsementsi, D" uniqKey="Tsementsi D">D Tsementsi</name></author><author><name sortKey="Deleon Rodriguez, N" uniqKey="Deleon Rodriguez N">N Deleon-Rodriguez</name></author><author><name sortKey="Luo, C" uniqKey="Luo C">C Luo</name></author><author><name sortKey="Poretsky, R" uniqKey="Poretsky R">R Poretsky</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Oksanen, J" uniqKey="Oksanen J">J Oksanen</name></author><author><name sortKey="Kindt, R" uniqKey="Kindt R">R Kindt</name></author><author><name sortKey="Legendre, P" uniqKey="Legendre P">P Legendre</name></author><author><name sortKey="O Hara, B" uniqKey="O Hara B">B O'Hara</name></author><author><name sortKey="Simpson, Gl" uniqKey="Simpson G">GL Simpson</name></author><author><name sortKey="Solymos, P" uniqKey="Solymos P">P Solymos</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Peura, S" uniqKey="Peura S">S Peura</name></author><author><name sortKey="Eiler, A" uniqKey="Eiler A">A Eiler</name></author><author><name sortKey="Bertilsson, S" uniqKey="Bertilsson S">S Bertilsson</name></author><author><name sortKey="Nyk Nen, H" uniqKey="Nyk Nen H">H Nykänen</name></author><author><name sortKey="Tiirola, M" uniqKey="Tiirola M">M Tiirola</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Quaiser, A" uniqKey="Quaiser A">A Quaiser</name></author><author><name sortKey="Zivanovic, Y" uniqKey="Zivanovic Y">Y Zivanovic</name></author><author><name sortKey="Moreira, D" uniqKey="Moreira D">D Moreira</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Quast, C" uniqKey="Quast C">C Quast</name></author><author><name sortKey="Pruesse, E" uniqKey="Pruesse E">E Pruesse</name></author><author><name sortKey="Yilmaz, P" uniqKey="Yilmaz P">P Yilmaz</name></author><author><name sortKey="Gerken, J" uniqKey="Gerken J">J Gerken</name></author><author><name sortKey="Schweer, T" uniqKey="Schweer T">T Schweer</name></author><author><name sortKey="Yarza, P" uniqKey="Yarza P">P Yarza</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Raes, J" uniqKey="Raes J">J Raes</name></author><author><name sortKey="Koerbel, Jo" uniqKey="Koerbel J">JO Koerbel</name></author><author><name sortKey="Lercher, Mj" uniqKey="Lercher M">MJ Lercher</name></author><author><name sortKey="Von Mering, C" uniqKey="Von Mering C">C von Mering</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Raes, J" uniqKey="Raes J">J Raes</name></author><author><name sortKey="Letunic, I" uniqKey="Letunic I">I Letunic</name></author><author><name sortKey="Yamada, T" uniqKey="Yamada T">T Yamada</name></author><author><name sortKey="Jensen, Lj" uniqKey="Jensen L">LJ Jensen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Reshef, Dn" uniqKey="Reshef D">DN Reshef</name></author><author><name sortKey="Reshef, Ya" uniqKey="Reshef Y">YA Reshef</name></author><author><name sortKey="Finucane, Hk" uniqKey="Finucane H">HK Finucane</name></author><author><name sortKey="Grossman, Sr" uniqKey="Grossman S">SR Grossman</name></author><author><name sortKey="Mcvean, G" uniqKey="Mcvean G">G McVean</name></author><author><name sortKey="Turnbaugh, Pj" uniqKey="Turnbaugh P">PJ Turnbaugh</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Riesenfeld, Cr" uniqKey="Riesenfeld C">CR Riesenfeld</name></author><author><name sortKey="Schloss, Pd" uniqKey="Schloss P">PD Schloss</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rusch, Db" uniqKey="Rusch D">DB Rusch</name></author><author><name sortKey="Halpern, Al" uniqKey="Halpern A">AL Halpern</name></author><author><name sortKey="Sutton, G" uniqKey="Sutton G">G Sutton</name></author><author><name sortKey="Heidelberg, Kb" uniqKey="Heidelberg K">KB Heidelberg</name></author><author><name sortKey="Williamson, S" uniqKey="Williamson S">S Williamson</name></author><author><name sortKey="Yooseph, S" uniqKey="Yooseph S">S Yooseph</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Schindler, Dw" uniqKey="Schindler D">DW Schindler</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Seshadri, R" uniqKey="Seshadri R">R Seshadri</name></author><author><name sortKey="Kravitz, Sa" uniqKey="Kravitz S">SA Kravitz</name></author><author><name sortKey="Smarr, L" uniqKey="Smarr L">L Smarr</name></author><author><name sortKey="Gilna, P" uniqKey="Gilna P">P Gilna</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Stamatakis, A" uniqKey="Stamatakis A">A Stamatakis</name></author><author><name sortKey="Hoover, P" uniqKey="Hoover P">P Hoover</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Storey, Jd" uniqKey="Storey J">JD Storey</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tatusov, Rl" uniqKey="Tatusov R">RL Tatusov</name></author><author><name sortKey="Fedorova, Nd" uniqKey="Fedorova N">ND Fedorova</name></author><author><name sortKey="Jackson, Jd" uniqKey="Jackson J">JD Jackson</name></author><author><name sortKey="Jacobs, Ar" uniqKey="Jacobs A">AR Jacobs</name></author><author><name sortKey="Kiryutin, B" uniqKey="Kiryutin B">B Kiryutin</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tranvik, L" uniqKey="Tranvik L">L Tranvik</name></author><author><name sortKey="Downing, J" uniqKey="Downing J">J Downing</name></author><author><name sortKey="Cotner, J" uniqKey="Cotner J">J Cotner</name></author><author><name sortKey="Loiselle, S" uniqKey="Loiselle S">S Loiselle</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tringe, Sg" uniqKey="Tringe S">SG Tringe</name></author><author><name sortKey="Von Mering, C" uniqKey="Von Mering C">C von Mering</name></author><author><name sortKey="Kobayashi, A" uniqKey="Kobayashi A">A Kobayashi</name></author><author><name sortKey="Salamov, Aa" uniqKey="Salamov A">AA Salamov</name></author><author><name sortKey="Chen, K" uniqKey="Chen K">K Chen</name></author><author><name sortKey="Chang, Hw" uniqKey="Chang H">HW Chang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wang, Q" uniqKey="Wang Q">Q Wang</name></author><author><name sortKey="Garrity, Gm" uniqKey="Garrity G">GM Garrity</name></author><author><name sortKey="Tiedje, Jm" uniqKey="Tiedje J">JM Tiedje</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Webb, Co" uniqKey="Webb C">CO Webb</name></author><author><name sortKey="Ackerly, Dd" uniqKey="Ackerly D">DD Ackerly</name></author><author><name sortKey="Mcpeek, Ma" uniqKey="Mcpeek M">MA McPeek</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Webb, Co" uniqKey="Webb C">CO Webb</name></author><author><name sortKey="Ackerly, Dd" uniqKey="Ackerly D">DD Ackerly</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Weizhong, L" uniqKey="Weizhong L">L Weizhong</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Yannarell, Ac" uniqKey="Yannarell A">AC Yannarell</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zwart, G" uniqKey="Zwart G">G Zwart</name></author><author><name sortKey="Crump, Bc" uniqKey="Crump B">BC Crump</name></author><author><name sortKey="Agterveld, Mpkv" uniqKey="Agterveld M">MPKV Agterveld</name></author><author><name sortKey="Hagen, F" uniqKey="Hagen F">F Hagen</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Espagne</li><li>Suède</li><li>États-Unis</li></country><region><li>Maine (État)</li><li>Wisconsin</li></region></list><tree><country name="Suède"><noRegion><name sortKey="Eiler, Alexander" sort="Eiler, Alexander" uniqKey="Eiler A" first="Alexander" last="Eiler">Alexander Eiler</name></noRegion><name sortKey="Andersson, Siv G E" sort="Andersson, Siv G E" uniqKey="Andersson S" first="Siv G E" last="Andersson">Siv G E. Andersson</name><name sortKey="Bertilsson, Stefan" sort="Bertilsson, Stefan" uniqKey="Bertilsson S" first="Stefan" last="Bertilsson">Stefan Bertilsson</name><name sortKey="Zaremba Niedzwiedzka, Katarzyna" sort="Zaremba Niedzwiedzka, Katarzyna" uniqKey="Zaremba Niedzwiedzka K" first="Katarzyna" last="Zaremba-Niedzwiedzka">Katarzyna Zaremba-Niedzwiedzka</name></country><country name="États-Unis"><region name="Maine (État)"><name sortKey="Martinez Garcia, Manuel" sort="Martinez Garcia, Manuel" uniqKey="Martinez Garcia M" first="Manuel" last="Martínez-García">Manuel Martínez-García</name></region><name sortKey="Mcmahon, Katherine D" sort="Mcmahon, Katherine D" uniqKey="Mcmahon K" first="Katherine D" last="Mcmahon">Katherine D. Mcmahon</name><name sortKey="Stepanauskas, Ramunas" sort="Stepanauskas, Ramunas" uniqKey="Stepanauskas R" first="Ramunas" last="Stepanauskas">Ramunas Stepanauskas</name></country><country name="Espagne"><noRegion><name sortKey="Martinez Garcia, Manuel" sort="Martinez Garcia, Manuel" uniqKey="Martinez Garcia M" first="Manuel" last="Martínez-García">Manuel Martínez-García</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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